Generated by Cython 0.13 on Fri Aug 19 11:13:54 2011
Raw output: _home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.c
1:
2: include "interrupt.pxi" # ctrl-c interrupt block support
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":2 * * include "interrupt.pxi" # ctrl-c interrupt block support #<
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* include "stdsage.pxi" # ctrl-c interrupt block support * */ __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 2; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(((PyObject *)__pyx_t_2)); if (PyObject_SetAttr(__pyx_m, __pyx_n_s____test__, ((PyObject *)__pyx_t_2))<
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3: include "stdsage.pxi" # ctrl-c interrupt block support
4:
5: include "cdefs.pxi"
6: import numpy as np
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":6 * * include "cdefs.pxi" * import numpy as np #<
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* cimport numpy as np * */ __pyx_t_1 = __Pyx_Import(((PyObject *)__pyx_n_s__numpy), 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); if (PyObject_SetAttr(__pyx_m, __pyx_n_s__np, __pyx_t_1)<
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7: cimport numpy as np
8:
9: cdouble = np.double
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":9 * cimport numpy as np * * cdouble = np.double #<
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* ctypedef np.double_t cdouble_t * */ __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__np); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__double); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_2); __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; if (PyObject_SetAttr(__pyx_m, __pyx_n_s__cdouble, __pyx_t_2)<
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10: ctypedef np.double_t cdouble_t
11:
12: cpdef np.ndarray ode_cross(np.ndarray x, double t, double k_f, double k_r):
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":12 * ctypedef np.double_t cdouble_t * * cpdef np.ndarray ode_cross(np.ndarray x, double t, double k_f, double k_r): #<
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* cdef double l = x[0] * cdef double r = x[1] */ static PyObject *__pyx_pf_69_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0_ode_cross(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static PyArrayObject *__pyx_f_69_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0_ode_cross(PyArrayObject *__pyx_v_x, double __pyx_v_t, double __pyx_v_k_f, double __pyx_v_k_r, int __pyx_skip_dispatch) { double __pyx_v_l; double __pyx_v_r; double __pyx_v_c_1; double __pyx_v_c_2; double __pyx_v_c_3; PyArrayObject *__pyx_r = NULL; __Pyx_RefNannySetupContext("ode_cross"); /* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":12 * ctypedef np.double_t cdouble_t * * cpdef np.ndarray ode_cross(np.ndarray x, double t, double k_f, double k_r): #<
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* cdef double l = x[0] * cdef double r = x[1] */ static PyObject *__pyx_pf_69_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0_ode_cross(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static char __pyx_doc_69_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0_ode_cross[] = "File: _home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx (starting at line 12)"; static PyObject *__pyx_pf_69_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0_ode_cross(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyArrayObject *__pyx_v_x = 0; double __pyx_v_t; double __pyx_v_k_f; double __pyx_v_k_r; PyObject *__pyx_r = NULL; static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__x,&__pyx_n_s__t,&__pyx_n_s__k_f,&__pyx_n_s__k_r,0}; __Pyx_RefNannySetupContext("ode_cross"); __pyx_self = __pyx_self; if (unlikely(__pyx_kwds)) { Py_ssize_t kw_args = PyDict_Size(__pyx_kwds); PyObject* values[4] = {0,0,0,0}; switch (PyTuple_GET_SIZE(__pyx_args)) { case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); case 0: break; default: goto __pyx_L5_argtuple_error; } switch (PyTuple_GET_SIZE(__pyx_args)) { case 0: values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__x); if (likely(values[0])) kw_args--; else goto __pyx_L5_argtuple_error; case 1: values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__t); if (likely(values[1])) kw_args--; else { __Pyx_RaiseArgtupleInvalid("ode_cross", 1, 4, 4, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 12; __pyx_clineno = __LINE__; goto __pyx_L3_error;} } case 2: values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__k_f); if (likely(values[2])) kw_args--; else { __Pyx_RaiseArgtupleInvalid("ode_cross", 1, 4, 4, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 12; __pyx_clineno = __LINE__; goto __pyx_L3_error;} } case 3: values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__k_r); if (likely(values[3])) kw_args--; else { __Pyx_RaiseArgtupleInvalid("ode_cross", 1, 4, 4, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 12; __pyx_clineno = __LINE__; goto __pyx_L3_error;} } } if (unlikely(kw_args > 0)) { if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, PyTuple_GET_SIZE(__pyx_args), "ode_cross")<
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13: cdef double l = x[0]
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* cdef double r = x[1] * cdef double c_1 = x[2] */ __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_x), 0, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 13; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_2 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 13; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_v_l = __pyx_t_2;
14: cdef double r = x[1]
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":14 * cpdef np.ndarray ode_cross(np.ndarray x, double t, double k_f, double k_r): * cdef double l = x[0] * cdef double r = x[1] #<
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* cdef double c_1 = x[2] * cdef double c_2 = x[3] */ __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_x), 1, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 14; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_2 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 14; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_v_r = __pyx_t_2;
15: cdef double c_1 = x[2]
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* cdef double c_2 = x[3] * cdef double c_3 = x[4] */ __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_x), 2, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_2 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_v_c_1 = __pyx_t_2;
16: cdef double c_2 = x[3]
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":16 * cdef double r = x[1] * cdef double c_1 = x[2] * cdef double c_2 = x[3] #<
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* cdef double c_3 = x[4] * return np.array([(-3*k_f)*l*r + k_r*c_1, (-3*k_f)*l*r + (-2*k_f)*r*c_1 + (-k_f)*r*c_2 + */ __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_x), 3, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 16; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_2 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 16; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_v_c_2 = __pyx_t_2;
17: cdef double c_3 = x[4]
/* "/home/klho/.sage/temp/e6410/9442/spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx/_home_klho__sage_sage_notebook_sagenb_home_admin_1_code_sage62_spyx_0.pyx":17 * cdef double c_1 = x[2] * cdef double c_2 = x[3] * cdef double c_3 = x[4] #<
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* return np.array([(-3*k_f)*l*r + k_r*c_1, (-3*k_f)*l*r + (-2*k_f)*r*c_1 + (-k_f)*r*c_2 + * k_r*c_1 + 2*k_r*c_2 + 3*k_r*c_3, 3*k_f*l*r + (-2*k_f)*r*c_1 + (-k_r)*c_1 */ __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_x), 4, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_2 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_v_c_3 = __pyx_t_2;
18: return np.array([(-3*k_f)*l*r + k_r*c_1, (-3*k_f)*l*r + (-2*k_f)*r*c_1 + (-k_f)*r*c_2 +
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* k_r*c_1 + 2*k_r*c_2 + 3*k_r*c_3, 3*k_f*l*r + (-2*k_f)*r*c_1 + (-k_r)*c_1 * + 2*k_r*c_2, 2*k_f*r*c_1 + (-k_f)*r*c_2 + (-2*k_r)*c_2 + 3*k_r*c_3, */ __Pyx_XDECREF(((PyObject *)__pyx_r)); __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__np); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 18; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1); __pyx_t_3 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__array); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 18; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_t_1 = PyFloat_FromDouble(((((-3.0 * __pyx_v_k_f) * __pyx_v_l) * __pyx_v_r) + (__pyx_v_k_r * __pyx_v_c_1))); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 18; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_1);
19: k_r*c_1 + 2*k_r*c_2 + 3*k_r*c_3, 3*k_f*l*r + (-2*k_f)*r*c_1 + (-k_r)*c_1
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